AustralieFrV1, Main, Exploration, bibRecord, 005D27

Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study

Identifieur interne : 005D27 ( Main/Exploration ); précédent : 005D26; suivant : 005D28

Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study

Auteurs : Sandra Panchalingam [États-Unis] ; Martin Antonio [Gambie] ; Anowar Hossain [Bangladesh] ; Inacio Mandomando [Mozambique] ; Ben Ochieng [Kenya] ; Joseph Oundo [Kenya] ; T. Ramamurthy [Inde] ; Boubou Tamboura [Mali] ; Anita K. M. Zaidi [Pakistan] ; William Petri [États-Unis] ; Eric Houpt [États-Unis] ; Patrick Murray [Géorgie] ; Valeria Prado [États-Unis] ; Roberto Vidal [États-Unis] ; Duncan Steele [Suisse] ; Nancy Strockbine [Géorgie] ; Philippe Sansonetti [France] ; Roger I. Glass [Géorgie] ; Roy M. Robins-Browne [Australie] ; Marija Tauschek [Australie] ; Ann-Marie Svennerholm [Suède] ; Karen Kotloff [États-Unis] ; Myron M. Levine [États-Unis] ; James P. Nataro [États-Unis]

Source :

Clinical infectious diseases [ 1058-4838 ] ; 2012.

RBID : Pascal:13-0057224

Descripteurs français

Pascal (Inist)
- Diagnostic, Méthode, Etude cas témoin, Infection.

English descriptors

KwdEn :
- Case control study, Diagnosis, Infection, Method.

Abstract

To understand the etiology of moderate-to-severe diarrhea among children in high mortality areas of sub-Saharan Africa and South Asia, we performed a comprehensive case/control study of children aged <5 years at 7 sites. Each site employed an identical case/control study design and each utilized a uniform comprehensive set of microbiological assays to identify the likely bacterial, viral and protozoal etiologies. The selected assays effected a balanced consideration of cost, robustness and performance, and all assays were performed at the study sites. Identification of bacterial pathogens employed streamlined conventional bacteriologic biochemical and serological algorithms. Diarrheagenic Escherichia coli were identified by application of a multiplex polymerase chain reaction assay for enterotoxigenic, enteroaggregative, and enteropathogenic E. coli. Rotavirus, adenovirus, Entamoeba histolytica, Giardia enterica, and Cryptosporidium species were detected by commercially available enzyme immunoassays on stool samples. Samples positive for adenovirus were further evaluated for adenovirus serotypes 40 and 41. We developed a novel multiplex assay to detect norovirus (types 1 and 2), astrovirus, and sapovirus. The portfolio of diagnostic assays used in the GEMS study can be broadly applied in developing countries seeking robust cost-effective methods for enteric pathogen detection.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3502308

Affiliations:

Australie, Bangladesh, France, Gambie, Géorgie, Inde, Kenya, Mali, Mozambique, Pakistan, Suisse, Suède, États-Unis
Maryland, Victoria (État), Île-de-France
Baltimore, Melbourne, Paris
Université de Melbourne

Le document en format XML

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<author><name sortKey="Tamboura, Boubou" sort="Tamboura, Boubou" uniqKey="Tamboura B" first="Boubou" last="Tamboura">Boubou Tamboura</name>
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</author>
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</author>
<author><name sortKey="Houpt, Eric" sort="Houpt, Eric" uniqKey="Houpt E" first="Eric" last="Houpt">Eric Houpt</name>
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<s3>GEO</s3>
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<author><name sortKey="Prado, Valeria" sort="Prado, Valeria" uniqKey="Prado V" first="Valeria" last="Prado">Valeria Prado</name>
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<sZ>13 aut.</sZ>
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<author><name sortKey="Vidal, Roberto" sort="Vidal, Roberto" uniqKey="Vidal R" first="Roberto" last="Vidal">Roberto Vidal</name>
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<s3>USA</s3>
<sZ>13 aut.</sZ>
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<country>États-Unis</country>
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</author>
<author><name sortKey="Steele, Duncan" sort="Steele, Duncan" uniqKey="Steele D" first="Duncan" last="Steele">Duncan Steele</name>
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<country>Suisse</country>
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</author>
<author><name sortKey="Strockbine, Nancy" sort="Strockbine, Nancy" uniqKey="Strockbine N" first="Nancy" last="Strockbine">Nancy Strockbine</name>
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<country>Géorgie</country>
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<author><name sortKey="Sansonetti, Philippe" sort="Sansonetti, Philippe" uniqKey="Sansonetti P" first="Philippe" last="Sansonetti">Philippe Sansonetti</name>
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<country>France</country>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Glass, Roger I" sort="Glass, Roger I" uniqKey="Glass R" first="Roger I." last="Glass">Roger I. Glass</name>
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<s3>GEO</s3>
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<country>Géorgie</country>
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</affiliation>
</author>
<author><name sortKey="Robins Browne, Roy M" sort="Robins Browne, Roy M" uniqKey="Robins Browne R" first="Roy M." last="Robins-Browne">Roy M. Robins-Browne</name>
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<sZ>19 aut.</sZ>
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<country>Australie</country>
<placeName><settlement type="city">Melbourne</settlement>
<region type="état">Victoria (État)</region>
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<orgName type="university">Université de Melbourne</orgName>
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</author>
<author><name sortKey="Tauschek, Marija" sort="Tauschek, Marija" uniqKey="Tauschek M" first="Marija" last="Tauschek">Marija Tauschek</name>
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<country>Australie</country>
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<orgName type="university">Université de Melbourne</orgName>
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</author>
<author><name sortKey="Svennerholm, Ann Marie" sort="Svennerholm, Ann Marie" uniqKey="Svennerholm A" first="Ann-Marie" last="Svennerholm">Ann-Marie Svennerholm</name>
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</inist:fA14>
<country>Suède</country>
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</affiliation>
</author>
<author><name sortKey="Kotloff, Karen" sort="Kotloff, Karen" uniqKey="Kotloff K" first="Karen" last="Kotloff">Karen Kotloff</name>
<affiliation wicri:level="3"><inist:fA14 i1="01"><s1>Center for Vaccine Development, University of Maryland School of Medicine</s1>
<s2>Baltimore</s2>
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<sZ>1 aut.</sZ>
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<author><name sortKey="Levine, Myron M" sort="Levine, Myron M" uniqKey="Levine M" first="Myron M." last="Levine">Myron M. Levine</name>
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<author><name sortKey="Nataro, James P" sort="Nataro, James P" uniqKey="Nataro J" first="James P." last="Nataro">James P. Nataro</name>
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<region type="state">Maryland</region>
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<affiliation wicri:level="1"><inist:fA14 i1="16"><s1>Department of Pediatrics, University of Virginia School of Medicine</s1>
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<country>États-Unis</country>
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<series><title level="j" type="main">Clinical infectious diseases</title>
<title level="j" type="abbreviated">Clin. infect. dis.</title>
<idno type="ISSN">1058-4838</idno>
<imprint><date when="2012">2012</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><title level="j" type="main">Clinical infectious diseases</title>
<title level="j" type="abbreviated">Clin. infect. dis.</title>
<idno type="ISSN">1058-4838</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Case control study</term>
<term>Diagnosis</term>
<term>Infection</term>
<term>Method</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Diagnostic</term>
<term>Méthode</term>
<term>Etude cas témoin</term>
<term>Infection</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">To understand the etiology of moderate-to-severe diarrhea among children in high mortality areas of sub-Saharan Africa and South Asia, we performed a comprehensive case/control study of children aged <5 years at 7 sites. Each site employed an identical case/control study design and each utilized a uniform comprehensive set of microbiological assays to identify the likely bacterial, viral and protozoal etiologies. The selected assays effected a balanced consideration of cost, robustness and performance, and all assays were performed at the study sites. Identification of bacterial pathogens employed streamlined conventional bacteriologic biochemical and serological algorithms. Diarrheagenic Escherichia coli were identified by application of a multiplex polymerase chain reaction assay for enterotoxigenic, enteroaggregative, and enteropathogenic E. coli. Rotavirus, adenovirus, Entamoeba histolytica, Giardia enterica, and Cryptosporidium species were detected by commercially available enzyme immunoassays on stool samples. Samples positive for adenovirus were further evaluated for adenovirus serotypes 40 and 41. We developed a novel multiplex assay to detect norovirus (types 1 and 2), astrovirus, and sapovirus. The portfolio of diagnostic assays used in the GEMS study can be broadly applied in developing countries seeking robust cost-effective methods for enteric pathogen detection.</div>
</front>
</TEI>
<affiliations><list><country><li>Australie</li>
<li>Bangladesh</li>
<li>France</li>
<li>Gambie</li>
<li>Géorgie</li>
<li>Inde</li>
<li>Kenya</li>
<li>Mali</li>
<li>Mozambique</li>
<li>Pakistan</li>
<li>Suisse</li>
<li>Suède</li>
<li>États-Unis</li>
</country>
<region><li>Maryland</li>
<li>Victoria (État)</li>
<li>Île-de-France</li>
</region>
<settlement><li>Baltimore</li>
<li>Melbourne</li>
<li>Paris</li>
</settlement>
<orgName><li>Université de Melbourne</li>
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<tree><country name="États-Unis"><region name="Maryland"><name sortKey="Panchalingam, Sandra" sort="Panchalingam, Sandra" uniqKey="Panchalingam S" first="Sandra" last="Panchalingam">Sandra Panchalingam</name>
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<name sortKey="Houpt, Eric" sort="Houpt, Eric" uniqKey="Houpt E" first="Eric" last="Houpt">Eric Houpt</name>
<name sortKey="Kotloff, Karen" sort="Kotloff, Karen" uniqKey="Kotloff K" first="Karen" last="Kotloff">Karen Kotloff</name>
<name sortKey="Levine, Myron M" sort="Levine, Myron M" uniqKey="Levine M" first="Myron M." last="Levine">Myron M. Levine</name>
<name sortKey="Nataro, James P" sort="Nataro, James P" uniqKey="Nataro J" first="James P." last="Nataro">James P. Nataro</name>
<name sortKey="Nataro, James P" sort="Nataro, James P" uniqKey="Nataro J" first="James P." last="Nataro">James P. Nataro</name>
<name sortKey="Petri, William" sort="Petri, William" uniqKey="Petri W" first="William" last="Petri">William Petri</name>
<name sortKey="Prado, Valeria" sort="Prado, Valeria" uniqKey="Prado V" first="Valeria" last="Prado">Valeria Prado</name>
<name sortKey="Vidal, Roberto" sort="Vidal, Roberto" uniqKey="Vidal R" first="Roberto" last="Vidal">Roberto Vidal</name>
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<country name="Gambie"><noRegion><name sortKey="Antonio, Martin" sort="Antonio, Martin" uniqKey="Antonio M" first="Martin" last="Antonio">Martin Antonio</name>
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<country name="Bangladesh"><noRegion><name sortKey="Hossain, Anowar" sort="Hossain, Anowar" uniqKey="Hossain A" first="Anowar" last="Hossain">Anowar Hossain</name>
</noRegion>
</country>
<country name="Mozambique"><noRegion><name sortKey="Mandomando, Inacio" sort="Mandomando, Inacio" uniqKey="Mandomando I" first="Inacio" last="Mandomando">Inacio Mandomando</name>
</noRegion>
</country>
<country name="Kenya"><noRegion><name sortKey="Ochieng, Ben" sort="Ochieng, Ben" uniqKey="Ochieng B" first="Ben" last="Ochieng">Ben Ochieng</name>
</noRegion>
<name sortKey="Oundo, Joseph" sort="Oundo, Joseph" uniqKey="Oundo J" first="Joseph" last="Oundo">Joseph Oundo</name>
</country>
<country name="Inde"><noRegion><name sortKey="Ramamurthy, T" sort="Ramamurthy, T" uniqKey="Ramamurthy T" first="T." last="Ramamurthy">T. Ramamurthy</name>
</noRegion>
</country>
<country name="Mali"><noRegion><name sortKey="Tamboura, Boubou" sort="Tamboura, Boubou" uniqKey="Tamboura B" first="Boubou" last="Tamboura">Boubou Tamboura</name>
</noRegion>
</country>
<country name="Pakistan"><noRegion><name sortKey="Zaidi, Anita K M" sort="Zaidi, Anita K M" uniqKey="Zaidi A" first="Anita K. M." last="Zaidi">Anita K. M. Zaidi</name>
</noRegion>
</country>
<country name="Géorgie"><noRegion><name sortKey="Murray, Patrick" sort="Murray, Patrick" uniqKey="Murray P" first="Patrick" last="Murray">Patrick Murray</name>
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<name sortKey="Glass, Roger I" sort="Glass, Roger I" uniqKey="Glass R" first="Roger I." last="Glass">Roger I. Glass</name>
<name sortKey="Strockbine, Nancy" sort="Strockbine, Nancy" uniqKey="Strockbine N" first="Nancy" last="Strockbine">Nancy Strockbine</name>
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<country name="Suisse"><noRegion><name sortKey="Steele, Duncan" sort="Steele, Duncan" uniqKey="Steele D" first="Duncan" last="Steele">Duncan Steele</name>
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<country name="France"><region name="Île-de-France"><name sortKey="Sansonetti, Philippe" sort="Sansonetti, Philippe" uniqKey="Sansonetti P" first="Philippe" last="Sansonetti">Philippe Sansonetti</name>
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<country name="Australie"><region name="Victoria (État)"><name sortKey="Robins Browne, Roy M" sort="Robins Browne, Roy M" uniqKey="Robins Browne R" first="Roy M." last="Robins-Browne">Roy M. Robins-Browne</name>
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<name sortKey="Tauschek, Marija" sort="Tauschek, Marija" uniqKey="Tauschek M" first="Marija" last="Tauschek">Marija Tauschek</name>
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<country name="Suède"><noRegion><name sortKey="Svennerholm, Ann Marie" sort="Svennerholm, Ann Marie" uniqKey="Svennerholm A" first="Ann-Marie" last="Svennerholm">Ann-Marie Svennerholm</name>
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Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study

Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study

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